Hi Martin,
Thank you for your appreciation. We are glad to know that you like our product.
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In the past there have been occasions where I modified an sql script to create a new one and used 'Save…' on the file menu expecting to be given a warning or some other dialog if I attempted to overwrite an existing file (… normally means 'there will be a dialog or confirmation')
In this case you can use “SaveAs” option given in the file menu which will save it as a new file.
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By the way, I do note that your blog post recommends urgent upgrade to 8.6 Beta 2 – this doesn't seem to be available yet.
You can download SQLyog 8.6 Beta 2 from our downloads page (see the screenshot).
http://webyog.com/en/downloads.php
Regards,
Khushboo